fastq-dump_to_featureCounts.sh demonstration

by rnnh 4 years ago

GNU/Linux ◆ xterm-256color ◆ bash 199 views

This is a video demonstration of the script fastq-dump_to_featureCounts.sh.

During this demonstration, the full genome sequence and genome annotation for Saccharomyces cerevisiae S288C are used. RNA-Seq reads for Saccharomyces cerevisiae (SRR8933535) are used as the example FASTQ files in this demonstration.

Version of the script used in this video: https://github.com/rnnh/bioinfo-notebook/blob/7a4dd47ac457d7a7f36198f50290267552e56f1b/scripts/fastq-dump_to_featureCounts.sh

Demonstration using newer version of this script: https://asciinema.org/a/308745

Made for https://rnnh.github.io/bioinfo-notebook/

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