augustus demonstration

by rnnh 3 years ago

GNU/Linux ◆ xterm-256color ◆ bash 1120 views

In this video, augustus is used to predict genes in example_nucleotide_sequence.fasta. This results in a genome annotation file: augustus_example.gff. The script getAnnoFasta.pl is used to extract the amino acid sequences in this genome annotation file to a new FASTA amino acid file: augustus_example.aa. The mv command is used to change the extension of this file from “.aa” to “.faa”.

Made for https://rnnh.github.io/bioinfo-notebook/.

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