htseq-count demonstration

by rnnh 6 years ago

GNU/Linux • xterm-256color • bash 3286 views

In this video, htseq-counts is used to count how many reads in an alignment file (sorted_example_alignment.bam) match the genes in a genome annotation (example_genome_annotation.gtf).

Made for https://rnnh.github.io/bioinfo-notebook/

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