Reference Curation Walkthrough

by j-berg 5 years ago

macOS ◆ xterm-256color ◆ bash 280 views

A short tutorial on how to prepare a ribosome profiling reference folder for use with the XPRESSpipe pipelines. In this example, we are generating a library for human samples. We got the genomic fasta and transcriptomic GTF file from: ftp://ftp.ensembl.org/pub/release-97/fasta/homo_sapiens/dna/ & ftp://ftp.ensembl.org/pub/release-97/gtf/homo_sapiens/

Please check when you curate that you are using the most current Ensembl release for your organism of interest

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