manubot cite: automatically generate CSL metadata & formatted references from citation identifiers

by dhimmel 7 years ago

GNU/Linux • xterm-256color • zsh 2006 views

This recording demonstrates the manubot cite command line utility to produce CSL Data and rendered references for standard citation identifiers. Learn more at https://github.com/greenelab/manubot.

The recording shows the following commands (although with different argument orders and newlines):

# Generate CSL JSON Data for citations
manubot cite url:https://greenelab.github.io/meta-review/

# Render citations into formatted references
manubot cite --render \
  doi:10.1038/nbt.3780 pmid:29424689 pmcid:PMC5938574 arxiv:1407.3561 url:https://greenelab.github.io/meta-review/

# Change the bibliographic style
manubot cite --render \
  --csl=https://github.com/citation-style-language/styles/raw/master/dependent/nature-communications.csl \
  doi:10.1038/nbt.3780 pmid:29424689 pmcid:PMC5938574 arxiv:1407.3561 url:https://greenelab.github.io/meta-review/

The manubot program demonstrated here is written in Python and used by the larger Manubot project, which is a system for writing scholarly manuscripts on GitHub with continuous integration.

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