Preview for "Inspect" (in python) for Singularity

by vs 7 years ago

GNU/Linux ◆ xterm-256color ◆ bash 1644 views

More notes can be found in the README for the python API:

Inspect

Inspect will return (print to the screen, or stdout) a json data structure with the fields asked for by the user, specifically which can be in the set defined in inspect.help.

-l/--labels      Show the labels associated with the image (default)
-d/--deffile     Show the bootstrap definition file which was used
                 to generate this image
-r/--runscript   Show the runscript for this image
-t/--test        Show the test script for this image
-e/--environment Show the environment settings for this container

The bash client handles parsing these command line arguments into the following environment variables that are exported, and found by python:

SINGULARITY_MOUNTPOINT
SINGULARITY_INSPECT_LABELS
SINGULARITY_INSPECT_DEFFILE
SINGULARITY_INSPECT_RUNSCRIPT
SINGULARITY_INSPECT_TEST
SINGULARITY_INSPECT_ENVIRONMENT

Essentially, if any of the above for SINGULARITY_INSPECT_* are found to be defined, this is interpreted as “yes/True.” Otherwise, if the environment variable is not defined, python finds it as None and doesn’t do anything. In this manner, we can call the executable as follows (e.g., from inspect.sh).

eval_abort "$SINGULARITY_libexecdir/singularity/python/helpers/json/inspect.py"

and the python will look for the environmental variables specified above. This is different from the other json functions (below) that expect different parameters to be passed into the script call.

More by vs

Snakemake Example Workflow with SCIF and Singularity 01:07

by vs 6 years ago

Sneak Peak: singularity-compose 00:56

by vs 5 years ago

The First Demo / Prototype of the Flux Operator Elasticity! 03:04

by vs 1 year ago

Fireworks Stage 4 00:38

by vs 6 years ago

See all

You can download this recording in asciicast v1 format, as a .json file.

Download

Replay in terminal

You can replay the downloaded recording in your terminal using the asciinema play command:

asciinema play 122013.json

If you don't have asciinema CLI installed then see installation instructions.

Use with stand-alone player on your website

Download asciinema player from the releases page (you only need .js and .css file), then use it like this:

<!DOCTYPE html>
<html>
<head>
  <link rel="stylesheet" type="text/css" href="asciinema-player.css" />
</head>
<body>
  <div id="player"></div>
  <script src="asciinema-player.min.js"></script>
  <script>
    AsciinemaPlayer.create(
      '/assets/122013.json',
      document.getElementById('player'),
      { cols: 125, rows: 33 }
    );
  </script>
</body>
</html>

See asciinema player quick-start guide for full usage instructions.

While this site doesn't provide GIF conversion at the moment, you can still do it yourself with the help of asciinema GIF generator utility - agg.

Once you have it installed, generate a GIF with the following command:

agg https://asciinema.org/a/122013 demo.gif

Or, if you already downloaded the recording file:

agg demo.cast demo.gif

Check agg --help for all available options. You can change font family and size, select color theme, adjust speed and more.

See agg manual for full usage instructions.