Using Singularity to compile with GCC

by vs 7 years ago

GNU/Linux ◆ xterm-256color ◆ bash 3925 views

Does your cluster not have “that library” that you really need to compile your software? Here is an example that shows how to build a (very) basic image that you can use to do that. Complete instructions can be found on the repo:

https://github.com/researchapps/sherlock/tree/master/beelaj

and installing Singularity on your local machine here:

http://singularity.lbl.gov/install-linux

On sherlock, you will want to load singularity as a module

   module load singularity

On SCG4, this one is best:

 module load singularity/jan2017

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asciinema play 105877.json

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<!DOCTYPE html>
<html>
<head>
  <link rel="stylesheet" type="text/css" href="asciinema-player.css" />
</head>
<body>
  <div id="player"></div>
  <script src="asciinema-player.min.js"></script>
  <script>
    AsciinemaPlayer.create(
      '/assets/105877.json',
      document.getElementById('player'),
      { cols: 80, rows: 24 }
    );
  </script>
</body>
</html>

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While this site doesn't provide GIF conversion at the moment, you can still do it yourself with the help of asciinema GIF generator utility - agg.

Once you have it installed, generate a GIF with the following command:

agg https://asciinema.org/a/105877 demo.gif

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agg demo.cast demo.gif

Check agg --help for all available options. You can change font family and size, select color theme, adjust speed and more.

See agg manual for full usage instructions.